For use in check_prostate_redcap.
qc_criteria_smp()Tibble:
label: Description of the exclusion criterion.
filter_criterion: Expression that will be used in
filter
for restriction to observations that pass the criterion.
index: Level of QC that can be provided to
check_prostate_redcap in the qc_level_pts and
qc_level_smp arguments.
# Show all criteria:
qc_criteria_smp()
#> # A tibble: 10 × 3
#> label filter_criterion index
#> <chr> <list> <int>
#> 1 All samples <lgl [1]> 1
#> 2 Samples without qc'd patient data <language> 2
#> 3 Incomplete record <language> 3
#> 4 Missing date of sample <language> 4
#> 5 Missing disease extent <language> 5
#> 6 Sample date after last follow-up <language> 6
#> 7 Localized/reg. nodes sample; met_date before sample <language> 7
#> 8 Metastatic sample; met_date after sample <language> 8
#> 9 Localized sample; stage N1 or M1 <language> 9
#> 10 Regional nodes sample; stage M1 <language> 10
# Show code for criterion #4:
qc_criteria_smp()$filter_criterion[[4]]
#> !is.na(dx_smp_mos)